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rs216615782 SNP Detail
Summary
  • ID
    rs216615782
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:131592236 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGTCTTAAA CCATTTGAAA
    AATCAGAACA CTTTTTATCG TCTTGCTGAG AACTCAGGCT TGGTTTTTAG CACATAGTAA
    GTGGCTCACA GCTGCCTGTA ATGTTAGTTC TAGGAAATCT GATACTCTCT TCTGGCCTCT
    TCAGGCATTG CATATGTGTG ATGCATGTAT ACACTTAGGC ACACACATAC ACCTGCACGC
    R
    CACACACACA CACACACACA CCAAATAAAT GTAAACATCT TTAAAATTCT TTCATTTGGA
    GATACAAGGA TGGCTCTGTG CTTTAGAGTA TTTACTGCCA TTACAAATGA CCCCACATTG
    AGCGTTCAGG TCTTGGCACC CACATCGAGC AGTTTACAAC TGCCTTCAGT CCAGCTCTCT
    CAGATGTGGC ACCCTCTAGT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CZECHII/EiJ
FVB/NJ
I/LnJ
KK/HlJ
LG/J
LP/J
MOLF/EiJ
NOD/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
ZALENDE/EiJ
ss359749516 MGP_WTSI_3_131549439 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A G A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CZECHII/EiJ
FVB/NJ
I/LnJ
KK/HlJ
LG/J
LP/J
MOLF/EiJ
NOD/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
ZALENDE/EiJ
rs216615782 SNP A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A G A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359749516 MGP_WTSI_3_131549439 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:131592236 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm65547 predicted gene, 65547 1628 bp downstream
Rr585388 regulatory region 585388 109 bp proximal
Rr585389 regulatory region 585389 186 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory