rs216539333 SNP Detail

Summary

• ID
  rs216539333
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105173079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTATAA CTATCATTTA
  GATTGACATG TAATAGATTA GTCATGTATA ATTTAATTAA TATATAATCT TTCTAAATTA
  TAATTTATAA TATAGTAAGC ATTACTAGAT ACGACACATT CTTTGGAATA ATCAGGCTTT
  GTTTCATTAT GTTTTAAATT TATTACATGC ATGTACGTAT GTATGTTTGT ATGCATGTAT
  K
  TACGTTCCTC AAAGCATGTG TGGAGGCCAG AAGACAAATT ACAGGTCTTG GTTTTCTCCT
  TCTACTTGTG GGTCCTGGGG ACAAACTCAG GTCATGCGGC TGGGTGACAA GCACCTTTAC
  TCCCCGACCG TCTTGAAATC TCACTTTTAA AAAAGGTTCG TTTTTATTTT ATGCGTATGA
  CACTTTTCCT GCATATATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321243579	CHEV_4_104988487	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216539333					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105173079 () rs orientation: forward

Symbol	Name	Function Class
Gm40217	predicted gene, 40217	within coordinates
Rr596595	regulatory region 596595	444 bp distal
Rr596596	regulatory region 596596	703 bp proximal
Rr596597	regulatory region 596597	1177 bp proximal