rs216535820 SNP Detail

Summary

• ID
  rs216535820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163380023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggtcactcc cactagttag cgagtttaag
  gccagcctaa gctacatata caaaacccta ccgaaaaata aaaaTCTGAG ACTTGACTCC
  CTGGGAAACC GAGGCTCCCT GGCTGAGCCG GCTCTTCCTT AGCCAAGGCT TGCCCCAAAG
  R
  TGTCAGATAG CCTACTGACC ACCACAGAAA ATGAGAAAAG CAAAGTTCAG GACAGCGAGG
  AGGCTGCTTG ACAACACAGG GGTACACAGG TCATGGACAT ACATGCAAGG CTCCTGTAAC
  GCTTGGAAGA CAAGAAAAAC TAAGAAATGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603586	CHEV_2_163363839	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216535820					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163380023 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	1144 bp proximal