rs216534963 SNP Detail

Summary

• ID
  rs216534963
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGAACCT ATAAGCCAGC
  CTCAATTAAA TGTTCTCCTT ATAAGACTCG CTTTGGTCAC GGTATCTACT CGTAGCAGTC
  AAACCCTAAC TAAGACGGTG CTCACAGTTG CAAAGCAGGC AACAGAGTTA TCTCCTCAGC
  CCTGAAGTGT CTACTTAAAA AATTTTAAAG TTACATTTAT TTATTTATTT TTGTGTATGT
  K
  TGTGTATGTT TGTGTACGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA
  GGTCAAGGGA CAACGTACTG GAGTTGGTTC TCTCCTTCTA CCATGTGAGG TCTTGGTATC
  AACCCCAGGC CATTAGGCTT GGTGGCAGGT ACCTTTACCT ACTGAGCCAC CCCATCAGTC
  CAAATTTCTA CTTTTTAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss360108874	MGP_WTSI_3_145769556	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	T	G	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs216534963					SNP	T	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	T	G	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360108874	MGP_WTSI_3_145769556	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812347 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			1399 bp upstream
Rr586924	regulatory region 586924			553 bp proximal
Rr586925	regulatory region 586925			1528 bp proximal
Tssr36027	transcription start site region 36027			1397 bp downstream
Tssr36028	transcription start site region 36028			1417 bp downstream
Tssr36029	transcription start site region 36029			1455 bp downstream