rs216505344 SNP Detail

Summary

• ID
  rs216505344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163321612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGAACT CCAGATTGCC
  CCCCCCCTCC ACCTCTGCTT CCTGAGTAAT GGGATTCTAG GTCAGTATGA CAACACTTGG
  CTCCTAAGCT ATAATTTATA TTTTTATTTA TTCCAATATT TATTTTCTGT CTCCCTTACT
  TAGATGCTAG ATCGAGAGAG TACTCTGTTA CATTCACTGG TATAGCCCAG TGTCTAGAAC
  R
  GTACCTGGAG CTTACAAAGC GGTTAAACAA TTGTGTTACT GAACAAATCA ATCAATTACT
  GTTGGTATGG GGTCTTGCTC ATGCTCAGTA AATACTCTTC CCTGAGCTGT ATCCCATGTA
  TAGAACCATT ACTAGAGCTA GAAAGACTTG CTCAGGAGTT TAGAGAACTG GATACTCTTT
  CAGAGGAATT GATTACAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603400	CHEV_2_163305428	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216505344					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163321612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12636	CpG island 12636	1931 bp proximal
Rr569389	regulatory region 569389	822 bp proximal
Rr569390	regulatory region 569390	918 bp proximal
Rr569391	regulatory region 569391	1150 bp proximal
Rr569392	regulatory region 569392	1818 bp proximal