rs216497001 SNP Detail

Summary

• ID
  rs216497001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97950517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC CATTCAGAGC ATTAAACCTC
  R
  TCTGAGGGTG CAGCGGATGA GCGCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320844184	CHEV_3_97847124	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216497001					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97950517 () rs orientation: forward

Symbol	Name	Function Class
Notch2	notch 2	Intron
Rr581621	regulatory region 581621	1783 bp distal
Rr581622	regulatory region 581622	within coordinates
Rr581623	regulatory region 581623	1500 bp proximal
Tssr30816	transcription start site region 30816	1886 bp upstream