rs216410426 SNP Detail

Summary

• ID
  rs216410426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134343470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG AACAGGGACG AAGCCCAGGG
  R
  TAACCGCGGC AGGCGGGCGG CAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321695457	CHEV_5_134790486	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216410426					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134343470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			within coordinates
Gm71534	predicted gene, 71534			186 bp upstream
Gm71761	predicted gene, 71761			841 bp upstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
				Splice-Site
Rr378666	regulatory region 378666			153 bp upstream
Rr399401	regulatory region 399401			849 bp downstream
Rr621988	regulatory region 621988			852 bp distal
Rr621989	regulatory region 621989			351 bp distal
Rr621990	regulatory region 621990			56 bp proximal
Rr621991	regulatory region 621991			197 bp proximal
Rr621992	regulatory region 621992			1107 bp proximal
Tssr1657	transcription start site region 1657			340 bp downstream
Tssr49086	transcription start site region 49086			952 bp downstream
Tssr49087	transcription start site region 49087			920 bp downstream
Tssr49088	transcription start site region 49088			625 bp downstream
Tssr49089	transcription start site region 49089			330 bp upstream
Tssr53629	transcription start site region 53629			1397 bp upstream
Tssr53630	transcription start site region 53630			796 bp upstream
Tssr53631	transcription start site region 53631			192 bp upstream
Tssr53632	transcription start site region 53632			164 bp upstream
Tssr53633	transcription start site region 53633			143 bp upstream
Tssr53634	transcription start site region 53634			117 bp upstream
Tssr53635	transcription start site region 53635			68 bp upstream
Tssr53636	transcription start site region 53636			45 bp upstream
Tssr53637	transcription start site region 53637			21 bp downstream
Tssr53638	transcription start site region 53638			62 bp downstream