rs216395040 SNP Detail

Summary

• ID
  rs216395040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62581195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAAGATAG ATTTTTCTAT TGAGGGTTCT
  TTCACACACT AGCACTTCCC TACTTGGGAT CAGTGCCAtt attgcaagaa aacagtattc
  tagtggtctt tctggctgga gcattaaggg ttgtgtgggc tagccttgga ggtggaccac
  M
  acatatggca gtcttaaatg gtaaatgtat tctgagactc accttcaact cccagaagcc
  tttaggaaca taatccaACA TATGTATATC TTAAAGTGGA GAATATAGTG TATAGTATGC
  TGAGTAAGTG GGGTTTTGGT CAAACCATAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142895	CHEV_4_62323992	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216395040					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62581195 () rs orientation: forward

Symbol	Name	Function Class
Gm52741	predicted gene, 52741	1326 bp upstream
Rgs3	regulator of G-protein signaling 3	Intron
Rr398306	regulatory region 398306	1145 bp downstream
Rr593377	regulatory region 593377	1337 bp distal
Rr593378	regulatory region 593378	836 bp distal
Rr593379	regulatory region 593379	234 bp proximal
Tssr37513	transcription start site region 37513	662 bp upstream
Tssr37514	transcription start site region 37514	725 bp upstream