rs216394260 SNP Detail

Summary

• ID
  rs216394260
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106643446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAAGCGG AAAGGGGGAG
  GAAAAAAAAA GAGAGAGAAA TCAGCTACAG AGAGAGAAGG GGAAACAAAA CAATTAGAGA
  AAAGACAAGA CACAGGGAGG AGGGAAGGAG AACAGAAAAG AAATGTCAGA GGGAGAAAGA
  AATGGGCTGG GAGGGAACAA AACAAGTAGA AAAGCACATG CACTGGGGGG GGGGGGGGGG
  S
  GGGGGACAGG AAAGGGGCCG CTCCTGATCC ACACTCCACA CCACACATTC CTGGGCCTGA
  GCTGCTCACA GCTTTTGAGA CTCTGGGCAG CTAAGACTTC CTGCCCCAGG AAGCTGGCAG
  CCTGGCTGGG CCCCCTCCAG CTGCTCTCTA GGCCCTCTAG CCTCTACCCT GCTGAAGGAT
  GGTGTCCAGG CTTCCCCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C58/J	CAST/EiJ	CE/J	WSB/EiJ
ss362744929	MGP_WTSI_4_106458854	EVA_MGPV3	EVA_MGPV3	f	SNP	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C58/J	CAST/EiJ	CE/J	WSB/EiJ
rs216394260					SNP	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362744929	MGP_WTSI_4_106458854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106643446 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	within coordinates
Rr596809	regulatory region 596809	1293 bp proximal
Rr596810	regulatory region 596810	1304 bp proximal