rs216372395 SNP Detail

Summary

• ID
  rs216372395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116242313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCTTTA ATCCCAGCAC
  TCGGGAGGCA GAGGCAGGCG GATTTCTGAG TTCGAGGCCA GCCTGGTCTA CAAAGTGAGT
  TCCAGGACAG CCAGGGCTGG ACAGCCAGGG CTATACAGAG AAACCCTGTC TCGAAAAAAA
  CAAAAACAAA AACCCAACCA ACCAACCAAA CAAAAAAGTA TGCAACACAA TTGCTTTCAG
  W
  TATGGTCACC ACCCTCGGTT CTTTTTGTGT ATTGGAAATT ATGCCACTAA CTGGGACCAA
  ACTTCATTTG GGAGTTCTTG TACCACTGAT GATGCACCTA CTGCTGTGCT GATTTTCTTC
  TACTTATAGG CACGTTAGTC TCATTTCAGA TCTGTGCATT GAAGGATTAC ATGTTGCCTA
  TGCGTATTTC ACTATAATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369769118	MGP_WTSI_6_116215370	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216372395					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369769118	MGP_WTSI_6_116215370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116242313 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17882	CpG island 17882			716 bp distal
Gm44103	predicted gene, 44103			1257 bp upstream
Gm67200	predicted gene, 67200			1299 bp upstream
Rr399855	regulatory region 399855			1046 bp downstream
Rr637176	regulatory region 637176			1310 bp distal
Rr637177	regulatory region 637177			1077 bp distal
Rr637178	regulatory region 637178			540 bp distal
Rr637179	regulatory region 637179			247 bp proximal
Rr637180	regulatory region 637180			693 bp proximal
Rr637181	regulatory region 637181			1855 bp proximal
Tssr58359	transcription start site region 58359			1127 bp downstream
Tssr58360	transcription start site region 58360			1086 bp downstream
Tssr58361	transcription start site region 58361			1070 bp downstream
Tssr62562	transcription start site region 62562			1295 bp upstream
Zfand4	zinc finger, AN1-type domain 4			Intron
				mRNA-UTR