rs216354298 SNP Detail

Summary

• ID
  rs216354298
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165839312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTCTGGAG GAGCAGTCAG TGCTCTTCAC CACTGAGCCA
  TGTCTCCAGC CCCCACTAAT GCCCTTTAAA AAGAATATTT GTTTTTTTTT TTTTTTTTTT
  W
  AATTTATTTT ATGTATGAGT GCTCTGCTAC ATGTACACTT GCATGCCAGA AGAGGGCGTC
  AGTTCCCTTT ATAGATGGCC GTGAGCTGCC GTGTGGGTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss356470222	MGP_WTSI_2_165822892	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs216354298					SNP	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356470222	MGP_WTSI_2_165822892	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165839312 () rs orientation: forward

Symbol	Name	Function Class
Ncoa3	nuclear receptor coactivator 3	Intron
Rr570101	regulatory region 570101	911 bp distal
Rr570102	regulatory region 570102	42 bp proximal
Tssr21752	transcription start site region 21752	within coordinates