rs216336616 SNP Detail

Summary

• ID
  rs216336616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101568235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCACACA TCAGAGGGCT
  TGGCTGCCCT TTAGCTATAG CTCACAACCA TACCTGCAGC TGGCCCTTGT GTCAATCATA
  AATTGTCTTC AGGACCTCCA CATATGCCAA GATCTGTGGC TATTCAAGTT TCTTACAGAA
  AATAGCCAAA CGTTTGCATT GTAACCTAGG TACTTTCTCC CATATACTGC AAGTCCTTGT
  Y
  GATAAGTGAT AATACCTAGT AAAATATAAA GAGTTGTGTC ATGAAGGGAT CATGACAAGA
  AAATACCAAC ACATATTCAA AAACACACAA TTGAAAAATA TTGTTAATCT GTTGCTGGTA
  GGACCTGCGG ATGGGTGTAG GCAAACAGCA CTCAGCAGCT GACAGGGAAG CTCTTCCTGC
  CTTGGCTGGC GCACCATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321231113	CHEV_4_101383643	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216336616					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101568235 () rs orientation: forward

Symbol	Name	Function Class
Rr376927	regulatory region 376927	1269 bp downstream
Rr596204	regulatory region 596204	361 bp distal