rs216332682 SNP Detail

Summary

• ID
  rs216332682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGTCAA CCTCTGTGGT
  TAAATGCTAC CCTACCCCAC ACTCGGCAGA GGGAGGCTGC GTGCTACTCC CCTGAAGTCC
  CAGGGGCATC TCTTGAGAAT ATTGGCTTGA ATATGAGTAT TTTGGCGTCC TGGTCTACTC
  TACTGGGCCA TCCATAGCAG GTGGGGGTTT GAAAAGGACT CCAGAAGACT AAAGCCTTGG
  R
  ACTCACCTGG GCAATCTGAA GCCTGTGGGG TTTTGTTTGT TTGTTTGTTG TTTGGTTTTG
  GTTTTTCAAG ACAGGGTCTC TCTGTGTAGT CCTAGCTGTC CTGGCACTCA CTTTGTAGAC
  CAGGCTGGCC TCGAACTCAG AAATCCGCCT GCTTCTGCCT CCCGAGTGCT GGGATTAAAG
  GCGTGTGCCT CCACGCTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353460	CHEV_4_135452446	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216332682					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623842 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr377252	regulatory region 377252	1777 bp upstream
Rr602183	regulatory region 602183	1127 bp distal
Rr602184	regulatory region 602184	833 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	341 bp proximal
Rr602187	regulatory region 602187	464 bp proximal
Rr602188	regulatory region 602188	492 bp proximal
Rr602189	regulatory region 602189	1738 bp proximal
Tssr39650	transcription start site region 39650	1336 bp downstream
Tssr39651	transcription start site region 39651	1135 bp downstream
Tssr39652	transcription start site region 39652	1055 bp downstream
Tssr44006	transcription start site region 44006	1951 bp downstream