rs216330388 SNP Detail

Summary

• ID
  rs216330388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148718326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA AATCTTAGAA GAAAAAGAAG
  R
  AGGAGGAGGA GGGGGAGGGG GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320557243	CHEV_2_148702142	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216330388					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148718326 () rs orientation: forward

Symbol	Name	Function Class
Cst3	cystatin C	894 bp upstream
Rr374041	regulatory region 374041	199 bp downstream
Rr566976	regulatory region 566976	853 bp distal
Rr566977	regulatory region 566977	340 bp distal
Rr566978	regulatory region 566978	673 bp proximal
Tssr20682	transcription start site region 20682	1235 bp downstream
Tssr20683	transcription start site region 20683	1150 bp downstream
Tssr26688	transcription start site region 26688	962 bp upstream
Tssr26689	transcription start site region 26689	918 bp upstream
Tssr26690	transcription start site region 26690	790 bp upstream
Tssr26691	transcription start site region 26691	765 bp upstream