rs216308107 SNP Detail

Summary

• ID
  rs216308107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74522674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGACTGC TCCCGTCTTT
  GGCCAAAAGA GAAGTGAACC ACCAAAATAT GGGTATGAAT GTACATCCTT ATATACCTCA
  AGTAGACAGT TGGACAGACC CGAACAGATC TTGTCGAATA GAGCAACCTG TTACACAGCA
  AGTCCCCACT TGCTCATTCA CCGCCAACAT TAAAGAAGAA TCCAATTGCT GCATGTATTC
  Y
  GATAAGCGCA ACAAACTCAT TTCTGCCGAG GTCCCTTCGT ACCAGAGGCT GGTCCCCGAG
  TCTTGTCCTG TTGAGAACCC CGAGGTTCCT GTCCCTGGAT ATTTTAGACT GAGTCAGACC
  TACGCCACCG GGAAAACCCA AGAGTACAAT AACAGCCCCG AAGGCAGCTC CACTGTCATG
  CTCCAGCTCA ACCCTCGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484911	MGP_WTSI_2_74530387	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216308107					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484911	MGP_WTSI_2_74530387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74522674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11796	CpG island 11796	376 bp distal
Cpgi11797	CpG island 11797	11 bp proximal
D2Mit37	DNA segment, Chr 2, Massachusetts Institute of Technology 37	1443 bp proximal
Gm28309	predicted gene 28309	within coordinates
Gm74919	predicted gene, 74919	within coordinates
Hoxd10	homeobox D10	Coding-Synonymous
Igs15	intergenic site 15	within coordinates
Rr44605	regulatory region 44605	274 bp distal
Rr44606	regulatory region 44606	1727 bp proximal
Rr373365	regulatory region 373365	1566 bp downstream
Rr559350	regulatory region 559350	1825 bp distal
Rr559351	regulatory region 559351	567 bp distal
Rr559352	regulatory region 559352	396 bp distal
Rr559353	regulatory region 559353	224 bp distal
Rr559354	regulatory region 559354	1894 bp proximal
Tssr18406	transcription start site region 18406	461 bp downstream
Tssr18407	transcription start site region 18407	434 bp downstream
Tssr18408	transcription start site region 18408	390 bp downstream
Tssr18409	transcription start site region 18409	367 bp downstream
Tssr18410	transcription start site region 18410	354 bp downstream
Tssr18411	transcription start site region 18411	256 bp downstream
Tssr24622	transcription start site region 24622	551 bp upstream