rs216202306 SNP Detail

Summary

• ID
  rs216202306
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126341564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATTTT TAGGACAAAG
  CAAACAATAC ATATTTACGA AAGCCCAACC ATACAGATAG AAACGGCAAA CCAAAAGAGG
  AATTTGAAAG AAAGAAAATG TCATCAAGTC CCGAGCAAAC ACCACATGGT CTGTCTCCTT
  CGCCGGGGAA TGGTCCCACC AACTCACCTC AACCTGGACC TAACTTTCGC CCTGAGAAAC
  K
  GGGTTTCCCA GCAAGGCAGC TAGACCGAAC AAGTATCCAC TGGGTAAGCA CACCCACGCA
  AAAGCAGCGC TGGACTGGAA GCTCCAGTAA CTACAAAAAA ACAAAATGAC TCTCTAGGGG
  GCCATCCTAG AAAAGTTCTA CTCCCAGAAA AAAAAAAAAA AAAAAAGCAA AACGCTGGTG
  CGAGCGTGCT CACACACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355574638	MGP_WTSI_2_126325380	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216202306					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355574638	MGP_WTSI_2_126325380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126341564 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp8b4	ATPase, class I, type 8B, member 4			Intron
				mRNA-UTR
Rr564346	regulatory region 564346			368 bp distal
Rr564347	regulatory region 564347			within coordinates
Rr564348	regulatory region 564348			193 bp proximal
Rr564349	regulatory region 564349			953 bp proximal
Tssr632	transcription start site region 632			371 bp upstream
Tssr19934	transcription start site region 19934			568 bp downstream
Tssr19935	transcription start site region 19935			331 bp upstream
Tssr26038	transcription start site region 26038			1470 bp upstream
Tssr26039	transcription start site region 26039			37 bp downstream
Tssr26040	transcription start site region 26040			70 bp downstream
Tssr26041	transcription start site region 26041			87 bp downstream
Tssr26042	transcription start site region 26042			132 bp downstream
Tssr26043	transcription start site region 26043			195 bp downstream
Tssr26044	transcription start site region 26044			270 bp downstream
Tssr26045	transcription start site region 26045			648 bp downstream
Tssr26046	transcription start site region 26046			987 bp downstream