rs216197383 SNP Detail

Summary

• ID
  rs216197383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100587178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCTGCATT GCTATTCCAG GGCCTAGCAC
  ATCCTGAGAT GTCTAGCAGA TCCttgatca tctgagatgg ggtttcacag tggggtttca
  ctgtgtagac caggctggac cagaacttgt tatcttgtca caacatcctg agttctgaat
  R
  taacaagcat gaattgacca GTTGCCAAAT CACAGGTGTC TTAGTTTTGT GGTTGATGTG
  GAAATTCTGG AGGCCCAGGC ATGTTGAGCC AAGTTTTGCT TCTCTGTATG GTTTGGGATT
  GAGAGAAAGC TTCAACCATG GCCCCAGTGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322349742	CHEV_7_108086485	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216197383					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100587178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	224 bp proximal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	mRNA-UTR
Tssr68182	transcription start site region 68182	909 bp upstream
Tssr73796	transcription start site region 73796	239 bp downstream
Tssr73797	transcription start site region 73797	311 bp downstream
Tssr73798	transcription start site region 73798	460 bp downstream
Tssr73799	transcription start site region 73799	828 bp downstream
Tssr73800	transcription start site region 73800	857 bp downstream
Tssr73801	transcription start site region 73801	926 bp downstream
Tssr73802	transcription start site region 73802	1056 bp downstream
Tssr73803	transcription start site region 73803	1135 bp downstream
Tssr73804	transcription start site region 73804	1157 bp downstream
Tssr73805	transcription start site region 73805	1981 bp downstream