rs216175123 SNP Detail

Summary

• ID
  rs216175123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80945450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGGTG TTAAGAATGG
  AGAATTCAGG AAAGGTATTA AATTCCTTAA TCGAAACACT GTATTATGGG AAGGCAGGCA
  CCAATAAAGA ATTAGGTGAG AAATACAGAG GTCAAGAGGC CACTTGGACA TTTTCAAAGG
  AATTGGTTAT GGTTTTTCTC TTGAACTTTT TTTTTTTTTT TAAAACGTGC CTTTGTGCCC
  Y
  GAAACCCTCA CCTTTTGGTG GTGTATTTTT TTGTATGTTC ATGAATGACT ATTTTGTGTG
  TGTTGGAAGC GATCTAATCC TGCATAGGAA ATGAGAATTA CTTTCAGCTT TCAAGTGTAC
  CTGAAATGTT TAGAAAACTT TCAGATGCGA GTTCCCCTGG GCTGGGATTG CACAGAGCTG
  GAGAAAAGCC TCTTTCATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358623207	MGP_WTSI_3_80842065	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216175123					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358623207	MGP_WTSI_3_80842065	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80945450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13283	CpG island 13283	316 bp distal
Gm16000	predicted gene 16000	within coordinates
Gm64611	predicted gene, 64611	within coordinates
Pdgfc	platelet-derived growth factor, C polypeptide	Intron
Rr578682	regulatory region 578682	1717 bp distal
Rr578683	regulatory region 578683	1034 bp distal
Rr578684	regulatory region 578684	1683 bp distal
Rr578685	regulatory region 578685	1627 bp distal
Rr578686	regulatory region 578686	1175 bp distal
Rr578687	regulatory region 578687	471 bp distal
Rr578688	regulatory region 578688	153 bp distal
Rr578689	regulatory region 578689	704 bp proximal
Rr578690	regulatory region 578690	1230 bp proximal
Rr578691	regulatory region 578691	1417 bp proximal
Tssr29617	transcription start site region 29617	1772 bp downstream
Tssr29618	transcription start site region 29618	1405 bp downstream
Tssr29619	transcription start site region 29619	1132 bp downstream
Tssr29620	transcription start site region 29620	1067 bp downstream
Tssr29621	transcription start site region 29621	938 bp downstream
Tssr29622	transcription start site region 29622	918 bp downstream
Tssr29623	transcription start site region 29623	752 bp downstream