rs216136239 SNP Detail

Summary

• ID
  rs216136239
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:79997324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTACTTT ATCAGAGGTG
  GCACCGGAGG CTTGTTTGAT CTTGGAAACT GCATCCTGAA TACAGCTTCC AAATTTCCAG
  TAGTCATTTG CCAGTTTTGT TTTTTTCAAG TGTGACTGGC TTTTTTTTTT TTTTTTTTTC
  CCTCCCTCTT TCTCCTGTCT GGGAGAGCTG GGTTGTATTT CAATGAGACT GAAGCTGACA
  M
  GAAAACAGAG TGCAAGATCG AGTTAAATTT TAAATTATAT AAATAAATAG AAAGATAAAT
  AAATAAAAGA AGAAGAGAGG GGGGAAAAAA GGACAACTCT GAGGGGGGCA TTTTTAGACT
  AGGATGTTAT CTCTTAGTTT AAAAGATGAC TATTTAAAAA GAAATTACAG CCTGCAGTAG
  TCACTCTCTG TCTGTCTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368947929	MGP_WTSI_6_79970335	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216136239					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368947929	MGP_WTSI_6_79970335	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79997324 () rs orientation: forward

Symbol	Name	Function Class
Gm4409	predicted gene 4409	within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4	Intron
Rr632526	regulatory region 632526	1283 bp distal
Rr632527	regulatory region 632527	1422 bp distal
Rr632528	regulatory region 632528	688 bp distal
Rr632529	regulatory region 632529	63 bp distal
Tssr57230	transcription start site region 57230	1396 bp downstream
Tssr57231	transcription start site region 57231	1344 bp downstream
Tssr57232	transcription start site region 57232	1311 bp downstream
Tssr57233	transcription start site region 57233	1262 bp downstream