rs216077998 SNP Detail

Summary

• ID
  rs216077998
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129998040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTCTAG AAAATGTCTG
  ACTTGAGGCT ACCTCAGACT CTCCAGTAGT CTGCCAACTG CTAGCTTTTC TAGTTTTGTT
  TTTAGACGGT TTCACTACGC AGCCCAGGGT AGCTTCAAAT TTGAAATCTT CCTGGAAAAA
  AAGTGCTACA CATCTGTAAC CTAAGCGCTT GGAAAGTGGA GGCAGGAGAG TCAAGAATTC
  S
  AGGTCAGTCT TGACTACATA GCAAGTTCTA AGCCAGTCTG GGCTATGCGG GACCCTAATT
  GAAGAACCAA GAAAAGGCCA AATCACCTTC TTACCTCATC CTCCCAAGGG CTGGAGGATG
  AGGCTTTTTT AAATAAATAA ATATAAATAT ATATATATAT ATATATATTT TTTCAGGAAT
  GGGTTTTTTT TGTACAGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317084	CHEV_4_129781491	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216077998					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129998040 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1208 bp downstream
Rr600439	regulatory region 600439	1679 bp distal
Rr600440	regulatory region 600440	1180 bp distal
Rr600441	regulatory region 600441	406 bp distal
Rr600442	regulatory region 600442	255 bp proximal
Tssr39229	transcription start site region 39229	639 bp upstream