rs216056871 SNP Detail

Summary

• ID
  rs216056871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108324424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATGTTG GGACCAAAGA
  ACCGGGAAGA GTGAGGCTGG GCAAGCCAGA GGGCTTCTTC CTCTCATACC CTGAGCAATG
  AGGGATGTCA GATTGTATGA GAGAGGAGGC CACTCTCACA TGCTAGCTAT GTGCGACCTT
  TCCTAGAGTG AGGGACTTGA ATAAAGTAAT GGATTTTCAG AAGTCTCGAG GGAGGTGATG
  R
  TATGGTCTGA GGAGATAGCT GAGTGGGTAG AGAGACCCCA CCGAGCTGAG TCTGGATTCC
  CAGCACCCAC ATTAGAAAGC TGGGCACAGG CTCACCAACG TGACTGCTCA AACATGAACC
  AAAGTAGTCA GGAGACAGAC CAGGAGGCCT CAGCCCTGTA CAAGAACTAC AGGCGACTCG
  GGGATTCTGA GCGGGAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359164322	MGP_WTSI_3_108220026	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216056871					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359164322	MGP_WTSI_3_108220026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108324424 () rs orientation: forward

Symbol	Name	Function Class
Celsr2	cadherin, EGF LAG seven-pass G-type receptor 2	1041 bp upstream
Cpgi13701	CpG island 13701	719 bp distal
Gm52630	predicted gene, 52630	19 bp downstream
Rr583231	regulatory region 583231	1116 bp distal
Rr583232	regulatory region 583232	1010 bp distal
Rr583233	regulatory region 583233	233 bp distal
Rr583234	regulatory region 583234	959 bp distal
Tssr31250	transcription start site region 31250	1119 bp downstream
Tssr35143	transcription start site region 35143	1058 bp upstream
Tssr35144	transcription start site region 35144	1042 bp upstream