rs216053781 SNP Detail

Summary

• ID
  rs216053781
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141448872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAACAG CAGAGAAACA
  GCTTCACCCT CTGTAGACCT CAAGTCCTAC CAACAAATTC AACTTAAAAT TACTCCCCAT
  CAGCTGGCAA TTATAACTTG GGTCATCAAA ACACCCTACA CACACACACA CACACACACA
  CACACAAAAA TTGAAAAAAA TTTTTAAAAA AAACTTCAAA ACTGAAAACT GAACTTGGGC
  G
  TGATAGTGTA TTCTTGTAAT CCCAGCTGTA CAGGAGCCTG AAGCAGGAGG GCTGCTGTCT
  GAGACTAGCC TTGACCCCAC AGTTGAGACC TTGTCTCAAA AACAACAACA ACAACAAAAA
  ACCCAACAAC AACAACAAAA AAAACCAAAG CAAACAAACA AAAACCAAAA GCAGCTGGTT
  GTGATGGCTC AGGCCTTAAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389275	CHEV_4_141277476	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216053781					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141448872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15241	CpG island 15241	1171 bp proximal
Ddi2	DNA-damage inducible protein 2	Intron
Rr398662	regulatory region 398662	1974 bp downstream
Rr603862	regulatory region 603862	1446 bp distal
Rr603863	regulatory region 603863	156 bp distal
Rr603864	regulatory region 603864	360 bp proximal
Rr603865	regulatory region 603865	1848 bp proximal
Tssr1364	transcription start site region 1364	1878 bp downstream
Tssr44360	transcription start site region 44360	1736 bp downstream
Tssr44361	transcription start site region 44361	1840 bp downstream
Tssr44362	transcription start site region 44362	1897 bp downstream