rs216008960 SNP Detail

Summary

• ID
  rs216008960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGAGCTG AAGCTTGTTA
  CATAACCATT TGATCTTTCA ATAGCAAATT TCACGAACAT ACTGAGAGCT GTTTGTGTGC
  CAGGTTGTGT GCCGGGTTCC CTCCTTCCCT TGAAGGCAGT CTTGGGAAGG ATGAGTCCAG
  GTGACATACC CAACAAGGGA CTTGGAGAAC GAGCCACCGG CAGTGGGAAC ACTGGGAAGG
  R
  AGCCCTTCAT CTTCCCTGGG CAGGAGGGTG CTCTGCAGTG GCTGCTCTGT ACATGTATGG
  TCTTTGAAAT TACACATCTA TTCTCTTTAG CCTTCCTCTT GCGATGATGG ACAGTAACCA
  AAAGCAGTGT GGGGAGAAAA GAGTCCATTT GACTTCCATT TTCAGGTAAC GGGTTGTCAC
  TGACAGAAGT CAGGGTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771950	CHEV_3_54373970	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216008960					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477469 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	673 bp upstream
Rr576808	regulatory region 576808	1654 bp distal
Rr576809	regulatory region 576809	633 bp proximal
Tssr29130	transcription start site region 29130	131 bp downstream