rs216003239 SNP Detail

Summary

• ID
  rs216003239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100587491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGATTGA GAGAAAGCTT
  CAACCATGGC CCCAGTGACA AACACATTGC AGCCAGTGCC CCAGGGCCTC CTCTGGGGCC
  TCAGACTCTC TGCCTCTGCC ACTTGGCTGT GAGCCTCTGT AAGAGATCGT GGGGTTGCCG
  CCGGAACTTC TGTTGTGTGA AGTAGAAGAG AATGGGGTCC AGAACACTGT TGACACTGGC
  R
  AAGGGCCGAG TGCCTTTGTA GGCAGCAGCG AAGGTCTCCA GCACAGGGCA AGAGACACCG
  GGCGTGGAGC GCACAGCCAA GTAGGCTGTC TTGGTGATGT GGAAAGGCAG GAAGCTGATG
  GCAAAGACAG CTGCCACCAC CACAGCCATA CGAGCCGCCT TGCTGCGCCG CTCTTGGGCC
  ACAGGACCTG CTGGGCCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372529621	MGP_WTSI_7_108086798	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216003239					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372529621	MGP_WTSI_7_108086798	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100587491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	within coordinates
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	Coding-Synonymous
Tssr68182	transcription start site region 68182	596 bp upstream
Tssr73796	transcription start site region 73796	58 bp upstream
Tssr73797	transcription start site region 73797	within coordinates
Tssr73798	transcription start site region 73798	147 bp downstream
Tssr73799	transcription start site region 73799	515 bp downstream
Tssr73800	transcription start site region 73800	544 bp downstream
Tssr73801	transcription start site region 73801	613 bp downstream
Tssr73802	transcription start site region 73802	743 bp downstream
Tssr73803	transcription start site region 73803	822 bp downstream
Tssr73804	transcription start site region 73804	844 bp downstream
Tssr73805	transcription start site region 73805	1668 bp downstream