rs215982858 SNP Detail

Summary

• ID
  rs215982858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121516012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGAGTGGG ACGACAGCTT AGTTACTCTT TACACTTCTC
  AGAGCCTACA AGGTGGACCC AAGTTTGACT TTACTCAAGG AAAGTAAAAA AGGAAGGAAG
  R
  AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA GGAAGGAAGA TTGTACAAAG CATCCAAAGA
  CACAGATATT TACATTACAG TTCATAACCG TAGCAAAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320905157	CHEV_3_121425281	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215982858					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121516012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	603 bp proximal
F3	coagulation factor III, tissue factor	1174 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	1269 bp distal
Rr584148	regulatory region 584148	444 bp distal
Rr584149	regulatory region 584149	287 bp proximal
Rr584150	regulatory region 584150	361 bp proximal
Rr584151	regulatory region 584151	1141 bp proximal
Rr584152	regulatory region 584152	1185 bp proximal
Rr584153	regulatory region 584153	1357 bp proximal
Rr584154	regulatory region 584154	1369 bp proximal
Tssr31453	transcription start site region 31453	1152 bp upstream
Tssr31454	transcription start site region 31454	1193 bp upstream
Tssr31455	transcription start site region 31455	1217 bp upstream
Tssr31456	transcription start site region 31456	1238 bp upstream
Tssr35426	transcription start site region 35426	1032 bp downstream