rs215902184 SNP Detail

Summary

• ID
  rs215902184
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151952547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCTGCTA TTTGCACTCA
  TCCTCTTCTA CAGACTGCAG AGATGATAGG GTGGCTGTTC CTCCTCAGAG TCTAGTCACT
  TCATTTACAT GCTCTACAGA CAGAATCCTT GGGCTAGACT TGAGAGCTTA TTAAGTAAAG
  TCCTTGTCTT GGAAACATGA GGATCTGAGT TGAGTCCCCA GAGCCCAAGT AAAACCAGGT
  A
  CACACCTGTA ATCTCAGCAC AGGGGAGGCA GAGACAAGCG GATTCCTCAG ACTGCTAGCC
  AGTCCTGTCA GAGAATGGCA TCCAAGGTTG TCTGGCTTCT CCTAGCTTGG GCAAGTACAC
  ATACCATACA CACATGCTGA ATTCCAAACC ACTGTTGAGT TAGCTTTTGT CTTACCATGC
  TTCTCCTTGC TTCAGCAAAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028497	CHEV_3_151909874	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215902184					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151952547 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	1261 bp distal
Rr587499	regulatory region 587499	1205 bp distal
Rr587500	regulatory region 587500	1039 bp distal
Rr587501	regulatory region 587501	747 bp distal
Rr587502	regulatory region 587502	448 bp distal
Tssr36179	transcription start site region 36179	198 bp downstream
Tssr36180	transcription start site region 36180	276 bp downstream
Tssr36181	transcription start site region 36181	300 bp downstream
Tssr36182	transcription start site region 36182	315 bp downstream
Tssr36183	transcription start site region 36183	343 bp downstream
Tssr36184	transcription start site region 36184	1046 bp downstream
Tssr36185	transcription start site region 36185	1062 bp downstream
Tssr36186	transcription start site region 36186	1170 bp downstream
Tssr36187	transcription start site region 36187	1347 bp downstream
Tssr36188	transcription start site region 36188	1415 bp downstream
Tssr36189	transcription start site region 36189	1441 bp downstream
Tssr36190	transcription start site region 36190	1519 bp downstream