rs215900752 SNP Detail

Summary

• ID
  rs215900752
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148253434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTGAGCT CTAGGCCAGC
  CATAGTTACA CAATAAGACC CGGTCTCAAA ACAAAACAAA ACAAAACAGA AAACCACAAC
  CCTCTCCCCC AGAAAACCCC AAATCAAATA TAGTAGCAAG AAAGGATAAA AACTATCTTA
  AATATCAATT TTTATTTCTT GTATGTATAT GTGTATGTGC ATATGTCTCT CTGTGTGTAG
  C
  CACATGGGTG CGGATGCCCG AGGAGAGCAC CCTATCCCTT GGAGTGGACG TTACCATTCG
  TTGTGAGCCT CCTGGTGTGG GTTCTGGAAA CTGAACGAGT CCTCTGAAAA GAACAGCAAG
  TGCTCTTAGG TGCTGAGCCA TCTCTCCAGT CCCTGTTCTC TCTCTCTCTC TCTCTCTCCC
  CTTCCCTCCC TCCCTCCTTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
ss363609424	MGP_WTSI_4_147543086	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
rs215900752					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363609424	MGP_WTSI_4_147543086	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148253434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15297	CpG island 15297	1989 bp distal
Cpgi15298	CpG island 15298	699 bp proximal
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	1709 bp distal
Rr604612	regulatory region 604612	240 bp distal
Rr604613	regulatory region 604613	704 bp distal
Rr604614	regulatory region 604614	479 bp distal
Rr604615	regulatory region 604615	1738 bp proximal
Rr604616	regulatory region 604616	1984 bp proximal