rs215847120 SNP Detail

Summary

• ID
  rs215847120
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104964214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTTAAA AATATGTAAA
  ACACACCTCA GTATATGTTT TTAAAGCTAC ATTTGCCTTG GATAGGGGAG GGGCTCAAGA
  AAGTCCACTC CTAGATGAGA AACTACTTAG GCAGTTCATG GCTGCTCGTG GGGCTGGGGG
  CAGGGGGCCT CTAGTAGGTT ACCTGTGTTC CAGTGGTTGG CTCTATACCC AGGCACAGAT
  C
  TGCAGATAGA TATATATGTA AAGATAGACA GATGTGAAAT TGGAATGGAG ATTTGGTGGG
  AGGGCATTAA AGGAGTTGGA AAGAGAAAGG GCAGGGACTC TGATTAAAGC ACATTGTATG
  AAATGTCAAA TAATAAATTA AAATGTACTC TTTTTTTTAA GTTTTAGGAT TTACTTGTTT
  TATGTATATG AGCTGTAGCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321242972	CHEV_4_104779622	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215847120					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104964214 () rs orientation: forward

Symbol	Name	Function Class
Prkaa2	protein kinase, AMP-activated, alpha 2 catalytic subunit	Intron
Rr596533	regulatory region 596533	1416 bp proximal
Rr596534	regulatory region 596534	1800 bp proximal