rs215846634 SNP Detail

Summary

• ID
  rs215846634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138222919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtgtgtgt ttgtgtgttt gtgtgtgtgt
  gtAGGAATGG GTGTCTATGT GAAGGTCAGA AGAGGACACT ATAACCCAAA GCTGTCAGAG
  ACTACCTGTT CTGCTCTGTC ACCCTCCCCC CTTACCCACT TCAGACAAGG TTACAGGGCC
  Y
  GGCAGTGGTC CACTTTTTAA AAGATGAGTT TGAATTTGGG GGTTGAACTT GGGTCTTCAC
  CTTTGTACAG CCTGTGCTCT TATCCTTGAG CTCCCCTGAG CCCCCAAACC AATGTAAATG
  GAGCTTTGGC TCAGAGTGGG GTGCTGAGTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321374287	CHEV_4_138051523	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215846634					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138222919 () rs orientation: forward

Symbol	Name	Function Class
Gm32549	predicted gene, 32549	871 bp upstream
Rr602944	regulatory region 602944	1566 bp distal
Rr602945	regulatory region 602945	201 bp distal
Rr602946	regulatory region 602946	31 bp proximal
Rr602947	regulatory region 602947	329 bp proximal
Rr602948	regulatory region 602948	631 bp proximal
Rr602949	regulatory region 602949	934 bp proximal
Rr602950	regulatory region 602950	1828 bp proximal