rs215739878 SNP Detail

Summary

• ID
  rs215739878
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146052147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACAGGAGA GTGTTGGATA AGTGAAAAGG
  GAATGGGAGA AGGAGGGGGG ATGGCTGGCA GGTGGGTGGG GGTAGGGCTA GTTTgatgga
  tggatgctta gatggatgga gggagggagg gattattgaa tggataaatg gatggatgga
  C
  ggatggacgg atggatggat ggttgtttgc atagagggag ggatgggttg ggatgatgga
  atgagggaat ggttgaatgg atggattgga gggagggagg gatggctggC TGAAGTGACA
  GGCAGAGAAG GTAAGGAGTG TGAAAGTGCC                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321010023	CHEV_3_146009356	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215739878					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146052147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	878 bp distal
Gm40167	predicted gene, 40167	42 bp upstream
Rr587010	regulatory region 587010	92 bp distal
Rr587011	regulatory region 587011	974 bp distal