rs215678450 SNP Detail

Summary

• ID
  rs215678450
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150571971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTACCA GGGCCTCTCT
  TGGCTGCTCT GTGGGCAGGG TGACTGAGTA CTTTGGTCCT CAGTATTGCT GTAGTGAGAT
  GGACTTGTTA CATGGCTTTA GAAATCTTTC AAAATGAGTT TTAATAGATT TAGGTTTATA
  GATAGTGTTG TGCGAGAATG AATCAGGGCA CTTGAAATGT TTTGTTTGTT TGTTTGGTTG
  K
  TTGGTTGGTT GGTTGGTTAG TTGTTTTTTT GTTTTGTTTT GTTTTTCCAA GTATGCTGAG
  GTGTTTATAG TGGATGGTCT TTAGGCATTT GGGGGGAGGG GCATATGCAT GCACGTTCAC
  TTAACTGAGG GGGGGTTAGT GTCAGCCAAC CATTATGGTT CATGCTAGGT TAGTGCTCTG
  CTGCTGAGGT TATTTCCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
ss363663928	MGP_WTSI_4_149861623	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
rs215678450					SNP	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363663928	MGP_WTSI_4_149861623	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150571971 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rere	arginine glutamic acid dipeptide (RE) repeats			Intron
				mRNA-UTR
Rr605316	regulatory region 605316			1030 bp distal
Rr605317	regulatory region 605317			389 bp proximal
Rr605318	regulatory region 605318			890 bp proximal
Tssr40412	transcription start site region 40412			854 bp upstream