rs215664349 SNP Detail

Summary

• ID
  rs215664349
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118578526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACAGAG CCACAGATGC
  CACAAGCTGT GTCAGGGCTC TGTGTGGAAG ACTCAAGGAG GTCTGAATTC TGCTACCAAC
  TCTCACACTG TGGCCCAAGA CCTTTAGCTC CCTCCATGCC TCAGTTTTCT CCTCGATAAT
  AGTAGGTAGA ATAACATGCA TGACGCAGGG GCTTAGTTGT AAGGTGACTG TTATACAAGC
  A
  TGAGGCCCCA GGCTCAATCC CTAGTATTCA TGAGAAGCTG GGAGCCACCA GCTGAATTGG
  TGAGCCCCAG GTTCAGTGAG GAATCCCAGC TCAGTGCAAA GTAATCGAAG GTACTGGATG
  TCAATCCCTG GCCTCCGCAC ACGTGCACAC ACAAGTACAT GTACCCCATA CACAAACTTA
  AACATGTAAA GACAGATGTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321925435	CHEV_6_118551583	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215664349					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118578526 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Gm38887	predicted gene, 38887			within coordinates
Rr637495	regulatory region 637495			739 bp proximal