rs215641540 SNP Detail

Summary

• ID
  rs215641540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77648852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGCAGTTT TTATGTCCTG CAATCTGCAA
  CTACATCCTC CTCTCCTCTC TGTCTATTTT TAATCACTTA TAGCTGAGAT GTATGGTAGA
  AAATAATTTG AGGGTTGCAA TTCCTAACAA TAGCTGAAAG AAGCATAAAA TATTTGCAGA
  Y
  GAGTCTCAAA TTATTTTTAA CCTGTGACCT AAGAGATAAA GAACTATGTC TTTCATGTCC
  CTTAACCAAG GCAGAATAGC GGCTTCTGGA AGCTCACACC CCAAAACAAT CGGTACACTT
  TCCCAGAAAA TACACTTCAA TATAGAAACA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320358145	CHEV_2_77656565	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215641540					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77648852 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11837	CpG island 11837			1180 bp distal
Rr559844	regulatory region 559844			1703 bp distal
Rr559845	regulatory region 559845			759 bp distal
Rr559846	regulatory region 559846			1499 bp distal
Rr559847	regulatory region 559847			1430 bp distal
Tssr24865	transcription start site region 24865			1880 bp upstream
Tssr24866	transcription start site region 24866			1817 bp upstream
Tssr24867	transcription start site region 24867			1781 bp upstream
Tssr24868	transcription start site region 24868			1760 bp upstream
Tssr24869	transcription start site region 24869			1693 bp upstream
Tssr24870	transcription start site region 24870			1577 bp upstream
Tssr24871	transcription start site region 24871			1046 bp upstream
Tssr24872	transcription start site region 24872			1014 bp upstream
Tssr24873	transcription start site region 24873			826 bp upstream
Zfp385b	zinc finger protein 385B			Intron
				Noncoding-Transcript-Variant