rs215540545 SNP Detail

Summary

• ID
  rs215540545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:16950132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCTTAGC CCGTAGTTTA
  CACATCCAGT GACCCTCCAC TGGAGAGAAC TGACCCCCCC TGCCCCTTAG CCCGTAGTTT
  ACACATCCAG TGACCCTCCA CTGGAGAGAA CTGACCCCCC CCCACCCCTT AGCCCGTAGT
  TTACACATCC AGTGACCCTC CACTGGAGAG AACTGACCCC CCCCCCCCCG CCCCTTAGCC
  Y
  GTAGTTTACA CATCCAGTGA CCCTCCACTG GAGAGAACAG ATTCTTCCTT TTCCAGAAGA
  TTTTTCTTAC AAACTCAGTT CTGGTTACTG GTGGGACTTT TATCCATTTC CAAGCTCTGA
  TCTGGAATTT GGACCCGTAC TCTTAGCAGC TTCCTTTCTC ATATCTTGGA CTTTAATTGT
  GGCTCTATTC CATGATTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	DBA/1J	FVB/NJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367512266	MGP_WTSI_6_16900133	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	DBA/1J	FVB/NJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs215540545					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367512266	MGP_WTSI_6_16900133	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:16950132 () rs orientation: forward

Symbol	Name	Function Class
Gm67421	predicted gene, 67421	within coordinates
Rr626731	regulatory region 626731	992 bp distal
Rr626732	regulatory region 626732	946 bp distal