rs215540216 SNP Detail

Summary

• ID
  rs215540216
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62441778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGAGCAT CTACAGTCAC
  TAGAGGACTA CAAAGCTAAG TAAGTCTAGA AAGCCAGACA CCAAGTAAGT AATGCTACCA
  TCAGGTGAAG ACATTTCCTC GTTCGCTCGC TCACAGCTCC TTAGTCATCT CCTAGAGAGC
  AGCCATTCTA AGCACGAGTT CCTATGGTCA ACTACTGTAC AGTCAAACTG GGTGACCAGG
  M
  TCAAAGCCCC ATTGTTTCCC CCTGAGCCTT TAGTGCTTCT GTGACTTGGA ACACTGCAGG
  CAACATGGAT GTTATTACTT ATTCAGAGGG GCAGGGAAAT GGGATCAGAA ACTAGCTAGC
  CATATACTTT AAGTAGACAA GCAATACCAA ACTATGTAGT CACTCAGAAT CGCTTATTCA
  AAAACATCCT AACCTGCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss361714664	MGP_WTSI_4_62184575	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C	C	C	A	C	C	C	C	C	A	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs215540216					SNP	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C	C	C	A	C	C	C	C	C	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361714664	MGP_WTSI_4_62184575	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62441778 () rs orientation: forward

Symbol	Name	Function Class
4933430I17Rik	RIKEN cDNA 4933430I17 gene	1828 bp upstream
Pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)	mRNA-UTR
Rr367636	regulatory region 367636	1480 bp upstream
Rr593339	regulatory region 593339	1240 bp proximal
Rr593340	regulatory region 593340	1517 bp proximal
Rr593341	regulatory region 593341	1839 bp proximal
Tssr42018	transcription start site region 42018	855 bp downstream
Tssr42019	transcription start site region 42019	1241 bp downstream
Tssr42020	transcription start site region 42020	1303 bp downstream
Tssr42021	transcription start site region 42021	1495 bp downstream