rs215523417 SNP Detail

Summary

• ID
  rs215523417
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117736058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATATGT AGACGAACAC
  TTAACCCTGA CTGTTCGATG ATTTAAGTTA CAGGGGAAGG TTCCAGACAA ACAGTAATAA
  GGAATGTCTG TGGTGGCCAA TTGTGAATGG AACGTACCAG TTTCCAGTGT AGTGCACTCT
  TCAGAGAAGT CCAAGGTTCC CATGTGCTCG GGGAGGCTGA ACCTGACTTA TGACCGCCCC
  T
  CCCCCCGCCT CGACCCCCCC CCCCCCCGCC CCCATCCCAT GACCCTGAGC TGGAATGGAA
  GGTTCTTCCA AAGAAAGAGT GTGTCAGGCT CAGTATTCCC CATTACTAGG AGTCATCTCT
  GGGTCATACT TGGTAGATTC CAGGGAGTTT CTCTGCACTT ACTTTACACA CACACACACA
  CACACACACA CACACACACA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CBA/J	CE/J	LG/J	LP/J	NOD/ShiLtJ	RF/J	SWR/J
ss369805079	MGP_WTSI_6_117709115	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CBA/J	CE/J	LG/J	LP/J	NOD/ShiLtJ	RF/J	SWR/J
rs215523417					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369805079	MGP_WTSI_6_117709115	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117736058 () rs orientation: forward

Symbol	Name	Function Class
Rr637359	regulatory region 637359	289 bp distal
Rr637360	regulatory region 637360	385 bp distal