rs215505948 SNP Detail

Summary

• ID
  rs215505948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145098630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGCCAGT GTCTGGGCAT CACACACAAC ACTGTCCAAG
  TTTCCTTAGC ATCTAATTTA TTTTCCCCCA TGTCCCTGAA AAACCCCTAT TAAACAATTA
  Y
  CTCCATATAT TATATCTGTT TTTATGCATA TCTGCCTCTC TGCTAGACCA CAAGGTCTTT
  GAGAAAAGAG ATAAATTTAT TTTAAATATA TTACAGTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321008145	CHEV_3_145055839	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215505948					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145098630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm35133	predicted gene, 35133			899 bp upstream
Rr586774	regulatory region 586774			444 bp distal
Rr586775	regulatory region 586775			240 bp distal
Rr586776	regulatory region 586776			1329 bp proximal