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rs215476579 SNP Detail
Summary
  • ID
    rs215476579
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:58626100 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGAGAGGGC TGAAGGGATC
    CGATAAGACC GGGAGAAGAT CCGGGATCTA GCTAGGGAGC GCCGCTGCAA GGTTCTTGCT
    GGGCTGTGTT GAGGCGGATG AAGGATGTCT TGAGAATTAC GATGGTTGTT AAATCCCAGA
    GATGTTTTAA ACCGCCGCTA CCAGATGCAA TGTACTCCTC GCCTCCTGGC TTTTTGGGTT
    R
    TATTTGAATA GGGTAAAGAA CAGCTCAGAC CCGAAAATAC TTAAAACTAG AAGAAATAAT
    TGCAACGGTT GCTTCACAAG CTTGTATTTT AAGTACGGTT TCCCAAATAT AAGTGTTTAC
    GACACAGTGC TTAAGTGAAA AAGAGCAAGT CACAAAATCA AGACTACTGC ATAATCCTAG
    GATTAAGGAT TGGATACTAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss349770160 MGP_WTSI_1_58643785 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215476579 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss349770160 MGP_WTSI_1_58643785 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:58626100 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi281 CpG island 281 144 bp distal
Hycc2 hyccin PI4KA lipid kinase complex subunit 2 618 bp upstream
Ndufb3 NADH:ubiquinone oxidoreductase subunit B3 Intron
Rr411457 regulatory region 411457 761 bp distal
Rr411458 regulatory region 411458 547 bp distal
Rr411459 regulatory region 411459 722 bp distal
Rr411460 regulatory region 411460 within coordinates
Tssr93 transcription start site region 93 300 bp downstream
Tssr6781 transcription start site region 6781 540 bp downstream
Tssr6782 transcription start site region 6782 495 bp downstream
Tssr6783 transcription start site region 6783 316 bp downstream
Tssr11786 transcription start site region 11786 623 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory