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rs215463178 SNP Detail
Summary
  • ID
    rs215463178
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:79957950 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGACAGGATT ATTTGTTTCT
    CTAGAGAATC TGCCTTCTAA ATCTCCAATG GCTCTTTGAA ACAGATATCT CTCGTTCGTT
    CAATGGCTAT AAAAATGGCT TCCTTTTTAA AAGTTATTCT CTGCTGTTTG CATTATTGGG
    GTGCTTTCAT GCGAGGCACC ACAATACCAT GGATTGCTTC ATGTAATGGA AAATATGTAT
    R
    CACTGAGAGC ACTCTATGTC CAGATGGAGA AGAGTAGAGA GGATTTGGAC TTCTAAACAA
    AGTTTGATGT AGTTGTCCTT TATAAAAGCG ATGACATAAG CTTGCCCATA TACTACCTTT
    CATGAAACAC TGTGTAAACA TGCGACAGCA TTAAAGATGG GAATCCATCT ACGGGGCACT
    GTGGTCCTCC AGTTATCTTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss354604713 MGP_WTSI_2_79967763 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215463178 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss354604713 MGP_WTSI_2_79967763 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:79957950 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11847 CpG island 11847 1352 bp proximal
Pde1a phosphodiesterase 1A, calmodulin-dependent Intron
Noncoding-Transcript-Variant
Rr373421 regulatory region 373421 401 bp downstream
Rr560060 regulatory region 560060 548 bp distal
Rr560061 regulatory region 560061 1323 bp proximal
Rr560062 regulatory region 560062 1842 bp proximal
Tssr24917 transcription start site region 24917 1334 bp downstream
Tssr24918 transcription start site region 24918 1407 bp downstream
Tssr24919 transcription start site region 24919 1511 bp downstream
Tssr24920 transcription start site region 24920 1554 bp downstream
Tssr24921 transcription start site region 24921 1577 bp downstream
Tssr24922 transcription start site region 24922 1611 bp downstream
Tssr24923 transcription start site region 24923 1638 bp downstream
Tssr24924 transcription start site region 24924 1684 bp downstream
Tssr24925 transcription start site region 24925 1929 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory