rs215461826 SNP Detail

Summary

• ID
  rs215461826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109334609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGCAT ATATATATAT
  ATGCCTTCCC AATACTACCC ACAGAATAAT CTTAAGAAAT CTCTTGCCGA GCAGTAGTGG
  CGCACACCTT TAATCCCAGC ACTTGGGAGG CAGAGGCAGG CAGATTTCTG AGTTCGAGGC
  TAGCCTGGTC TACAGAGTGA GTTCCAGGAC AGCCAGGGAT ACACATAGAA ACCCTGTCTC
  R
  AAAAACAAAA CAAAACGAAA CGGGAAAAAA AAAAAAAACG GAAAGAAGAA ATCTCTAATC
  TCATTCAAAA TACTGCCCCT CTTTTATAAA TTCTAAATCC CAAAATGGCC AAAGTGCTTC
  TAGTCCTCTC AAAGACTGTT CTCGCTGGCT GAGATTTCCA CAGACAGACA GTATTCCTGA
  CCTCTTACCT CTCGCTGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362802685	MGP_WTSI_4_109150017	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215461826					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362802685	MGP_WTSI_4_109150017	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109334609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14574	CpG island 14574	394 bp distal
Rnf11	ring finger protein 11	Intron
Rr597332	regulatory region 597332	1 bp distal
Rr597333	regulatory region 597333	562 bp distal
Tssr38352	transcription start site region 38352	1562 bp downstream
Tssr38353	transcription start site region 38353	1511 bp downstream
Tssr42763	transcription start site region 42763	1123 bp upstream
Tssr42764	transcription start site region 42764	975 bp upstream
Tssr42765	transcription start site region 42765	935 bp upstream
Tssr42766	transcription start site region 42766	916 bp upstream
Tssr42767	transcription start site region 42767	804 bp upstream
Tssr42768	transcription start site region 42768	747 bp upstream
Tssr42769	transcription start site region 42769	685 bp upstream