rs215340162 SNP Detail

Summary

• ID
  rs215340162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88821860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTACTCAGG CAGTGGTGGG
  AGGTCTTCCA GGTAGGTAGT TTTGGATTCC TTTCAAGAAG AAAACAATCG TAAAGACATT
  TCTTTGACAA CCTACTTAGA AAAACTGCTT AACTCTACAA ACAGATGCAG ATGAGATTAT
  TTCAGAGGTG AGAAGCACAC TTCTCCACCC TCTGGTTTTG TTTCGTTTGA AAAGTGTTCG
  Y
  CCATGTGGCC TAGGCTACCC CAAATGCACC ACCATCCTGC CACAGTCTCC CAAGTGCTGG
  CTACCAGGCT AGCTATACCA GGATGGCTTT GGTTTACGTT TATATTTTAT ATCCTAAGGT
  GATATACAAG TACATTCCAG TGGTAGTACT ACCACTAAGG GCAGGGCTAC TTTCCAAACC
  CTGGGAGTAA GAGTACTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321602038	CHEV_5_89103026	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215340162					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88821860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16030	CpG island 16030			891 bp proximal
Grsf1	G-rich RNA sequence binding factor 1			Intron
				Noncoding-Transcript-Variant
Rr614150	regulatory region 614150			748 bp proximal
Rr614151	regulatory region 614151			1655 bp proximal
Rr614152	regulatory region 614152			1956 bp proximal
Tssr51689	transcription start site region 51689			1189 bp downstream
Tssr51690	transcription start site region 51690			1541 bp downstream
Tssr51691	transcription start site region 51691			1564 bp downstream
Tssr51692	transcription start site region 51692			1612 bp downstream