rs215320962 SNP Detail

Summary

• ID
  rs215320962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141169238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCTTCT TTTGGGAAAA
  TTATAGAGAA AACCACTAGA TTTAACCATA GTCTCTTCAT GATATTGACA GGTTATTAGC
  ACCATCCCCC CATGGTAGCC ATTGTCTTCA TAAAACCATT TACATTCTGA GGACAAGTAA
  CATAAACGTT AGAAATTGCC ATTTCACAGA AGTCACACTT GGATGTGTGT AAGAGTTAAT
  R
  ACTACAATTT TGAGAACATA GATATAAACA AATTCTTGAA CTTAACTGAG GAAGGTACTG
  TTGAACTGAG GTAGCAAAAA AGGCTGAGTG TCTTCTAGAT CAGAACAACA GTCATCAATG
  ACAATGCCGG GCATTTTACC TATAGTTAAT ACTTTCTAAC CTCAGGAAAC CTTATATCTC
  ATTGCTTCTA ATAAACCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320992370	CHEV_3_141126441	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215320962					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141169238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	1163 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	630 bp distal
Rr586319	regulatory region 586319	1249 bp proximal
Rr586320	regulatory region 586320	1505 bp proximal
Rr586321	regulatory region 586321	1846 bp proximal
Tssr1065	transcription start site region 1065	1218 bp upstream
Tssr1066	transcription start site region 1066	1784 bp upstream
Tssr32031	transcription start site region 32031	1639 bp upstream
Tssr32032	transcription start site region 32032	1702 bp upstream
Tssr32033	transcription start site region 32033	1894 bp upstream
Tssr35916	transcription start site region 35916	1098 bp downstream