rs215291485 SNP Detail

Summary

• ID
  rs215291485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137496033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGCTTTAG CTGCAGTGCC TGGGAGAGGA
  TCTGGACCTG TCTCACAACC AAGCCAAGTG TCTTTGATAG TCCTTTTTGG CCAGGGCATT
  ATTCAGTCAC TGGCGGAAGT TATTTAGGGT CACCCGCTGT GAAGGGCTGG GGAAAGGACG
  Y
  GGGCTGTGGT CAGATCCCAA AGGAACTTCT GTAGATGAAG GTTAAGCCAG ACCCTGGAGG
  GACAGAACAT ACTTCAGGTC TCCAGGAGCT GACATCCCTT CTTGGTAGGA AACGGACTTA
  GGAGAACAAG GTTGAGAGGG TGCATTGAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367274	CHEV_4_137324637	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215291485					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137496033 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602710	regulatory region 602710			106 bp proximal
Rr602711	regulatory region 602711			911 bp proximal
Tssr44137	transcription start site region 44137			941 bp downstream
Tssr44138	transcription start site region 44138			972 bp downstream
Tssr44139	transcription start site region 44139			1226 bp downstream
Tssr44140	transcription start site region 44140			1240 bp downstream
Tssr44141	transcription start site region 44141			1257 bp downstream
Tssr44142	transcription start site region 44142			1266 bp downstream
Tssr44143	transcription start site region 44143			1282 bp downstream
Tssr44144	transcription start site region 44144			1308 bp downstream
Tssr44145	transcription start site region 44145			1333 bp downstream