rs215256203 SNP Detail

Summary

• ID
  rs215256203
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72577062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTAGT TTTTAGTTGT
  TTGAGACAGT GTTTCTCTCT ATAGTTCTAG ATGTCCTGGA ACTTGCTATT GCTATATAGA
  CCAGGCTGGC CTTGAACTCA CTGAGATCCT CCCACCTCAG CCTCCTGAGT GCTGAGACTA
  AAGCTGTGAA CACTTGGCCT TGGGCAATGA TGTTTAATGA GCAGATTTAC TGGACATAGT
  S
  GCACATTCCT GTGATCCCAG CGCTGGGGAG GAAAAGACAG GTGGATCTCT ACATAGGGAG
  TTCCAGCCCA GTTAGGGCTA CATGTGTAGT GAAACCGTGT GTCTTAAAAA ACACGAATCA
  ATAAAATCAA AGAAAGTAAG TAAATAAAGG AGGAAAGGAA GTAAAAGACT GGGAGAAAAC
  AACAAATCCC AGGTCTTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368752916	MGP_WTSI_6_72550073	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215256203					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368752916	MGP_WTSI_6_72550073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72577062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17548	CpG island 17548	1109 bp distal
Elmod3	ELMO/CED-12 domain containing 3	1666 bp upstream
Retsat	retinol saturase (all trans retinol 13,14 reductase)	Intron
Rr399707	regulatory region 399707	1449 bp downstream
Rr632239	regulatory region 632239	1748 bp distal
Rr632240	regulatory region 632240	1441 bp distal
Rr632241	regulatory region 632241	1832 bp proximal
Tssr57150	transcription start site region 57150	1470 bp downstream
Tssr61470	transcription start site region 61470	1711 bp upstream
Tssr61471	transcription start site region 61471	1655 bp upstream