rs215218054 SNP Detail

Summary

• ID
  rs215218054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146129770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGCTTCA CTTGATTATT
  TTATGGGCGG GTGTTTTGCC TCCATGTCTG TGCACCATGT CCATGGTTGG TACCTGTGGA
  GGCCAGGAGA GGGCGCTGGC TCCCATGGAG CTGGAGCCTA AAGGTGCTGA CAGCTGAGCC
  CAGGTCCGCT GCAAGAGCCG CATGCACTTC TCAGCACCGA GCGAGCCATC TTCCCAGCCC
  Y
  GGGAGTCTAT TTCTTAAAAA GCCCCTAAAC AGATACAGTT TATTTTAACC CTATTTAATT
  AGTGTTTAAT AATGGGCAAT GAATCTCTAA CCAATCATAC GTACGCATAT AACATAATAA
  TATATTGTAT ATAATATAAC ATGTTATATT ACATTATAGG TTTATACCAT ATACTATACT
  ATATATTATA GTACATTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321010309	CHEV_3_146086979	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215218054					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146129770 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	101 bp distal
Ssx2ip	SSX family member 2 interacting protein	Intron