rs215204228 SNP Detail

Summary

• ID
  rs215204228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163321786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGTATA GCCCAGTGTC
  TAGAACAGTA CCTGGAGCTT ACAAAGCGGT TAAACAATTG TGTTACTGAA CAAATCAATC
  AATTACTGTT GGTATGGGGT CTTGCTCATG CTCAGTAAAT ACTCTTCCCT GAGCTGTATC
  CCATGTATAG AACCATTACT AGAGCTAGAA AGACTTGCTC AGGAGTTTAG AGAACTGGAT
  R
  CTCTTTCAGA GGAATTGATT ACAGGATCAA TTCCCTGTAG CTACATGGCA GCTCATAACT
  CTAACTCCAG TCCAGGGGAT CCAACGCCCT CTTTTGGCCT TATGGGCACC CTGCATGCAT
  ATGGTAATAC AGGCATACAT GCAGACAAAA TACCCCCATA GATGATAGAT AGATAGATAG
  ATAGATAGAT AGATAGAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603403	CHEV_2_163305602	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215204228					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163321786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12636	CpG island 12636	1757 bp proximal
Rr569389	regulatory region 569389	648 bp proximal
Rr569390	regulatory region 569390	744 bp proximal
Rr569391	regulatory region 569391	976 bp proximal
Rr569392	regulatory region 569392	1644 bp proximal
Rr569393	regulatory region 569393	1828 bp proximal