rs215197623 SNP Detail

Summary

• ID
  rs215197623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109765515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTACTTTG AGACCTTGCT
  TCTTACATAT AAATAGTAAA TGAAAGGAAA TAAAATCAAT GTTATAAATT CAGGACTCTG
  CAGAAAAGGA CCCCCTGCCC TGAGACCTGG AGTGTTGCCT GGCCTCTACA GGAGGAGTCA
  TGCAAAGTCA CTAGGCCTGG GTTTCTCTCT CTCTTTACAG AAGGCCCCCA TCTCCACCCA
  R
  AAAACTCCAG AGGCACGGTT GTTTCCTTTT AAAGCCATGT TAGGCCCAAG TAGATGCACT
  TCTGCATTTT TAGCATTTAA ATAGAAATGG CTCTCTGGTG GGTTTTCCCC TGCGTTAGTC
  ATGCAAATGC TCTATGCCTC ACTTACCACT CAGTTTCGGT GCCGGGATGG TTCTTTTGCA
  CGCGTCCTGC TAAGACCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394800	CHEV_7_117309822	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215197623					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109765515 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	1373 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	1898 bp distal
Rr653201	regulatory region 653201	1384 bp distal
Rr653202	regulatory region 653202	1988 bp distal
Rr653203	regulatory region 653203	1369 bp distal
Rr653204	regulatory region 653204	1313 bp distal
Rr653205	regulatory region 653205	1314 bp distal
Rr653206	regulatory region 653206	743 bp distal
Rr653207	regulatory region 653207	within coordinates
Rr653208	regulatory region 653208	175 bp proximal
Tssr2367	transcription start site region 2367	1382 bp upstream
Tssr2368	transcription start site region 2368	49 bp upstream
Tssr68492	transcription start site region 68492	1987 bp downstream
Tssr74253	transcription start site region 74253	1433 bp upstream
Tssr74254	transcription start site region 74254	44 bp downstream