rs215167914 SNP Detail

Summary

• ID
  rs215167914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80941852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAGCC AAATTCATTC
  AAAATGGATT GTTTGGTAAT TACAGGACTC TGGATTTTGT AAAACTGACT CTCAACACAA
  GGGTTTTTTA CTTTCCTGGG GAGAGTTTAA AAGCAAGAGA GAACAAAATG CCAGCAGAGG
  ACAAAGTGTT AAAGAGAACT TTGCCAAGGG CAAGAACAGT TCAAACAACA ACCATGTGAG
  Y
  GCACTGAAAA GAAACAGCCA ATGTGGCTGT GATTTTGTCT TGGGGTCACT CAGGAGCACC
  TGGCTGGCTT TATTTATAAG GCAATTGTCA AATCATTCTG TAGAATATGG ATGAGGTGAA
  ACACAGAGGT GGCGTGGTAT TGTAGATCAT CTGTAACTTT TCAAATACAA CCTTCTCTGA
  AATTCCAGGG AGAATGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358623138	MGP_WTSI_3_80838467	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	T	C	C	C	C	C	T	C	T	C	T	C	C	T	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215167914					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	T	C	C	C	C	C	T	C	T	C	T	C	C	T	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358623138	MGP_WTSI_3_80838467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80941852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13283	CpG island 13283	1687 bp proximal
Gm16000	predicted gene 16000	747 bp downstream
Gm42476	predicted gene 42476	771 bp downstream
Pdgfc	platelet-derived growth factor, C polypeptide	1871 bp upstream
Rr375235	regulatory region 375235	within coordinates
Rr578681	regulatory region 578681	within coordinates
Rr578682	regulatory region 578682	1381 bp proximal
Rr578683	regulatory region 578683	1882 bp proximal
Rr578684	regulatory region 578684	1894 bp proximal
Rr578685	regulatory region 578685	1950 bp proximal
Tssr29617	transcription start site region 29617	1815 bp upstream