rs215071803 SNP Detail

Summary

• ID
  rs215071803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21950140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTTCGCC GTTGGCCCCG CCCTCTGACG
  GACTGTGCCT TTGACAGTGA TTGAGCAGCT TCCGATGGAC CTACGGGACC GCTTCACGGA
  GATGCGCGAG ATGGATCTGC AGGTGCAGAG TAAGTGGCGC GTCTCCACGG CCCCGCGCAG
  Y
  CCCGGCCTCC CTCGGGCATC GCCTGGCGGG TCCTCCGCGC TACTTTTTTC AGGCTGTGAC
  AAGGAGGCGG CGGGCACACC GTACCGTTAA CACGCGGGGC ACAGCAAACA CAGTTGTTTG
  TGTACTGCAT GGAGATGACG ACACTGCACC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321763864	CHEV_6_21900141	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215071803					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21950140 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17189	CpG island 17189			within coordinates
Gm68432	predicted gene, 68432			623 bp upstream
Ing3	inhibitor of growth family, member 3			Intron
				mRNA-UTR
Rr399583	regulatory region 399583			641 bp downstream
Rr399584	regulatory region 399584			within coordinates
Rr627030	regulatory region 627030			783 bp distal
Rr627031	regulatory region 627031			474 bp distal
Rr627032	regulatory region 627032			within coordinates
Rr627033	regulatory region 627033			115 bp distal
Tssr55136	transcription start site region 55136			458 bp downstream
Tssr55137	transcription start site region 55137			79 bp downstream
Tssr55138	transcription start site region 55138			237 bp upstream