rs215071504 SNP Detail

Summary

• ID
  rs215071504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135671922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTCAGGC TGTCCTCAAA
  TTTACCATGT AGCTGAGGCT AGCCTTGAAC TCCTAATCTT CCTGCATTTA GCTCCTAAGT
  GCTGATATTG CATGCTTACA CTCTGAGCAG GGGGCTTATA AAGGGGAAAG GCACAACTTT
  GGTACTTCTC ATTGATGTAG CTGTGATGGC TGTTAGCAAG CATGACAGGA TATGAACTTT
  Y
  AGTAAGAATA AGGAGGCAGG TGGGTTTCTG AGTTTGAGGC CAGCCTGGTC TACAGAGTGA
  GTTCCAGGAC AGCCAGGGCT ATACAGAGAA ACCCTGTCTG GGGAAAAAAA AAAAAAAAAA
  AAGGGAGCCA GGTGGTGGTG GCGCATACTT TTAACCCTAG CATTTGGGAG GCAGAGGCAG
  GTGGATCTCT GAGTTTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363379114	MGP_WTSI_4_135500526	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215071504					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363379114	MGP_WTSI_4_135500526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135671922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15085	CpG island 15085	1664 bp proximal
Gm69275	predicted gene, 69275	1428 bp downstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	1854 bp upstream
Rr602209	regulatory region 602209	788 bp distal
Rr602210	regulatory region 602210	733 bp distal
Rr602211	regulatory region 602211	1045 bp proximal
Rr602212	regulatory region 602212	1756 bp proximal
Rr602213	regulatory region 602213	1848 bp proximal
Tssr39660	transcription start site region 39660	1836 bp upstream
Tssr44007	transcription start site region 44007	1754 bp downstream